Added comments to mirror tutorial.
All the bits are there. Now to get it all working

Conflicts:
	biotestmine/setup.sh
A fully working boostrap script.
Build fails without this file
Build fails without these dummy files.
Better setup.sh, learning lessions from biotestmine

Conflicts:
	testmodel/setup.sh
A superior bootstrapping experience.

Conflicts:
	testmodel/setup.sh
Improved readme
For some unfathomable reason none of this was committed.
Added test for integration key.
Merge branch 'beta' of github.com:intermine/intermine into biotestmine
Better handling of db encodings. Less verbose output.
Fixed api token generation.
Merge pull request #643 from alexkalderimis/hf642

Fixed api token generation.
Fixes #664. This makes sure that python code is actually correct
Fixed a perl test while I was there
Merge pull request #665 from alexkalderimis/664-python-code-gen

664 python code gen
Merge branch 'master' of github.com:intermine/intermine into beta
Merge branch 'beta' of github.com:intermine/intermine into beta
Merge branch 'beta' of github.com:alexkalderimis/intermine into beta