Liquid Phase input file writing

Goes with e640c18749be990f8a42df89941734fe6d1413b0 in RMG-Py.
The input file writer can now write liquid phase input files.
Next up is to fix the upload of an input file of a liquid
phase system.

Much still needs to be done about the layout, but at least it
won't write a gas phase reactor with liquid phase species, or
something like that.