Remove DJ specific profile

git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@170 dcde13d4-9b1b-0410-ac9e-ef07de68c835
Remove .so from svn

git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@171 dcde13d4-9b1b-0410-ac9e-ef07de68c835
remove generated tags files

git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@177 dcde13d4-9b1b-0410-ac9e-ef07de68c835
Convert to using Collate field instead of Makefile


git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@181 dcde13d4-9b1b-0410-ac9e-ef07de68c835
configure now defaults to building/installing included SQLite

This patch makes building and installing the included SQLite tarball
into R_LIBS/RSQLite/sqlite the default.  Version mismatch is becoming
increasingly common as more and more tools use (different versions of)
SQLite.  

The user can still link against an already installed SQLite using
configure args.


git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@182 dcde13d4-9b1b-0410-ac9e-ef07de68c835
Remove Makefile that was calling R CMD COMPILE

This isn't needed and bad things happen if you do 
R-devel CMD INSTALL RSQLite and happen to have an R on
your path.


git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@183 dcde13d4-9b1b-0410-ac9e-ef07de68c835
Fix unclosed textConnection calls

Thanks to B. Ripley and D. Eddelbuettel for the suggestions
and patches.

Also removing INDEX file which can be auto-generated


git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@184 dcde13d4-9b1b-0410-ac9e-ef07de68c835
Use path.expand for dbname arg in dbConnect

Thanks to Dirk E. for the suggestion


git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@185 dcde13d4-9b1b-0410-ac9e-ef07de68c835
When building sqlite, link to it statically


git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@186 dcde13d4-9b1b-0410-ac9e-ef07de68c835
Upgrade to sqlite 3.3.7

Untested on Windows.


git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@187 dcde13d4-9b1b-0410-ac9e-ef07de68c835
Cleanup .First.lib

Removed unneeded calls to library.


git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@188 dcde13d4-9b1b-0410-ac9e-ef07de68c835
Fix bug in dbWriteTable when used to import a file.

Thanks to Ashish Kulkarni for the report and patch.


git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@191 dcde13d4-9b1b-0410-ac9e-ef07de68c835
Ignore built sqlite


git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@202 dcde13d4-9b1b-0410-ac9e-ef07de68c835
Update signatures for changes in DBI

make.db.names and isSQLKeyword now have additional
named args.


git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@203 dcde13d4-9b1b-0410-ac9e-ef07de68c835
Fix maintainer email, version bump, depend on latest DBI.


git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@204 dcde13d4-9b1b-0410-ac9e-ef07de68c835
Merged patches from Ashish: 192:200  
Branch: https://hedgehog.fhcrc.org/compbio/r-dbi/branches/RSQLite-ak

Documentation modified to pass check.


git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@207 dcde13d4-9b1b-0410-ac9e-ef07de68c835
Getting table column names is now more efficient

Instead of pulling the entire table across, use limit 1.


git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@208 dcde13d4-9b1b-0410-ac9e-ef07de68c835
Backed out merge of Ashish's patches.  Things aren't working.



git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@209 dcde13d4-9b1b-0410-ac9e-ef07de68c835
Merged 192:193, remove junk files
Patch from Ashish K.


git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@211 dcde13d4-9b1b-0410-ac9e-ef07de68c835
Update to sqlite 3.3.8
Merged 193:194, thanks to Ashish K. for the patch


git-svn-id: https://hedgehog.fhcrc.org/compbio/r-dbi/trunk@212 dcde13d4-9b1b-0410-ac9e-ef07de68c835