Initial import of //depot/software/bioinformatics/lib/cpp/ConsensusCore/ from the state at revision #head

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 132632]
Properly override ToString methods
[tracking bug 24908]

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 132846]
       Make SWIG_LIB configurable

       [Tracking bug 24842]

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 132847]
       Pipe SWIG_LIB through

       [Tracking bug 24842]

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 132848]
       Makefile robustness

       [Tracking bug 24842]

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 132862]
       Add --pbi flag for configuring based on expected paths from perforce

       [Tracking bug 24842]

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 132866]
       CC: Fix setup.py --version

       [Tracking bug 24842]

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 132869]
Switch build over to new ConsensusCore

[Tracking bug 23893]

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 132872]
       Put back the package="" thing, needed for package_data

       [Tracking bug 24842]

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 132907]
bug 23893 - space and tabs

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 132908]
       Add demos

       [Tracking bug 24842]

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 132911]
Make tests target incremental

[Tracking bug 23893]

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 132913]
       Fix incremental Python build, gmock lookup

       [Tracking bug 24842]

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 132921]
       "make clean" should not require ./configure to have been run

       [Tracking bug 24842]

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 132933]
bug 23893 - now setup.py can understand environment variable from Makefile. Not sure if this is the right fix.

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 132935]
bug 23893 - environment variable parsing is not necessary.

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 132938]
       Restore "test" target

       [Tracking bug 24842]

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 133007]
bug 24842 - fix ubuntu 804 build with --version

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 133127]
Tweak README

[Tracking bug 24842]

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 133480]
       Move clean rule

       [Tracking bug 24842]

[git-p4: depot-paths = "//depot/software/bioinformatics/lib/cpp/ConsensusCore/": change = 133500]