The format of the platemap is really inconsistent.  It was all manually
entered so in some places it is BLANK, Blank, XXXX, *BLANK, xxxx

I am making a verbose option



On Wed, Feb 12, 2014 at 8:07 PM, Emily TerAvest <ejteravest@gmail.com>wrote:

> The lines start with a letter for the well id.
>
>
> On Wed, Feb 12, 2014 at 7:51 PM, adamrp <notifications@github.com> wrote:
>
>> In user_scripts/insertplatemap.py:
>>
>> > +        #print line
>> > +        line = line.split(',')
>> > +        if 'Plate' in line[0] and line[1] != '1':
>> > +            #new plate we only care about the first line
>> > +            platename=line[0]
>> > +            sqlstmt = "insert into plate (plate_id, plate) values (seq_plate_id.nextval, '%s');\n" % platename
>> > +            sqloutfile.write(sqlstmt)
>> > +        elif line[0] != '':
>> > +            #this line contains barcodes
>> > +            if len(line[0]) == 1:
>> > +                for barcode in line[1:]:
>> > +                    if barcode != '':
>> > +                        try:
>> > +                            barcode = int(barcode)
>> > +                        except:
>> > +                            continue
>>
>> In that case, explicitly test whether or not barcode == "BLANK" and, if
>> so, continue silently. But if it something that is not "BLANK" (i.e., it
>> *should* be a barcode), we do not want that to fail silently.
>>
>> --
>> Reply to this email directly or view it on GitHub<https://github.com/qiime/qiime_web_app/pull/617/files#r9696211>
>> .
>>
>
>