Created a new Cocoa application using the standard Xcode template.
Created new DataParser class.
Implemented public class method parseSMASH: in DataParser class. Takes output from antiSMASH and returns it an as NSDictionary.
Added various Domain classes.
Implemented openFile: method in AppDelegate class. Hooked it up to Open file menu item via an IBAction.
Created OpenReadingFrame and GeneCluster classes.
Added domains property in OpenReadigFrame class.
Added openReadingFrames property in GeneCluster class.
Added initWithDomains: method in OpenReadingFrame class.
Added initWithOpenReadingFrames: method in GeneCluster class.
Added new Substrate class.
Added specificity property in AdenylationDomain class.
Created OpenReadingFrameViewController and GeneClusterViewController classes and corresponding xib files.
Added private geneClusterViewControllers property in AppDelegate class.
Added geneCluster property in GeneClusterViewController class.
Making sure that autoresizing masks of ViewControllers' views are not translated into constraints. Would violate autolayout constraints that are to be set up later.
Added Simple-Graph as a submodule.
Added an Outline View to MainMenu.xib.
Hooked the Outline View up to an IBOutlet.
Added different cell types in the Outline View.