Porting to autotools
Adds script and data to check model
Search for math (-lm) library in configure
Now configure checks whether GNU Fortran compiler supports -fno-align-commons
Changed package version to match version.h
Removed unnecessary include dir in compiler flags
Better header handling

Better handling of conditional include of mkl specific header.
Removed duplicated header.
Moved header files to src/include

Also removed cblas.h and lapack.h headers (should be provided by the libraries
installed on the system).
Removed old Makefiles and duplicated headers
Fix conditionals in src/graphics/graphics.cpp

Replaced binary operator (&) with boolean operator (&&)
Corrects mkl includes in mat_spec.cpp solver_full.cpp