Explicitly declare our inputs and outputs.
update clinseq to use cnmops
update blessed build to one with exome-cnv
switch to a deterministic segmentation algorithm
update clinseq blessed build
Updated class browser cache.
Updated `genome` tab completion.
Updated `gmt` tab completion.
Fix how metric value is found - it won't always be a class property
Don't transfer refcov result metrics to build
Merge branch 'updated' into gb_master
CQID: wrap assign inst data cmd executes in eval because they may die.
switch back to DNAcopy seg algorithm but use fixed seed
update clinseq blessed build
move back to older test data
Do not check for updates while running cufflinks

On sGMS, when not connected to an external network, cufflinks hangs
indefinitely while attempting to check for updates over the network.
Update the test plan
add Concordance.
Add some detail to bamrc wrapper help
Remove reference to /gscuser/.

The FASTA doesn't need to be in one's homedir, anyway.