merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 2985 (Download preserves directories of original files)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 3037 (Group sudo)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 3057 (Rating web)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 3058 (Homebrew nginx (rebased onto develop))
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 3069 (Scalebar)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 3098 (Metadata reimport)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 3108 (Fixed bug ChannelSlider (rendering settings))
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 3109 (Disable keyboard navigation (up, down, left, right) for jquery tabs)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 3115 (CLI admin diagnostics: only check readability of var folder)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 3117 (Bugfix: Paste pending rendering settings)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 3118 (Flake8 OmeroFS)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 3121 (Make sure @omero_host@ is never present (fix #12555).)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 3122 (Customise Windows service name: omero.windows.servicename)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 3124 (refactoring share templates to remove duplicates)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 3126 (Robot test fixes)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 3127 (Batch Annotate with Read-only)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 3128 (OmeroCpp: Disable remaining integration search test)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 3130 (Reduce no. of broken integration tests.)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only

Repository: openmicroscopy/openmicroscopy
Excluded PRs:
  # PR 3119 bpindelski 'Remove the "dn" column from "password" (fix #2587).' (label: exclude breaking)
  # PR 2363 dominikl 'Java Gateway API' (label: exclude breaking)
  # PR 2585 aleksandra-tarkowska 'making time_zone and first_day_of_week configurable' (exclude comment)
  # PR 2182 joshmoore 'Read only flag' (label: exclude)
  # PR 3086 will-moore 'Create image by tiling 12459' (label: exclude)
  # PR 3129 jburel 'Dsl units' (label: breaking)
  # PR 3042 will-moore 'Download dataset project' (label: exclude)
  # PR 3000 jballanc 'Update artifacts for Lucene, Hibernate, and Spring' (user: jballanc)
  # PR 3111 snoopycrimecop 'Update develop submodules' (status: pending)
Already up-to-date.

Merged PRs:
  # PR 2985 will-moore 'Download preserves directories of original files'
  # PR 3037 joshmoore 'Group sudo'
  # PR 3057 will-moore 'Rating web'
  # PR 3058 sbesson 'Homebrew nginx (rebased onto develop)'
  # PR 3069 aleksandra-tarkowska 'Scalebar'
  # PR 3098 aleksandra-tarkowska 'Metadata reimport'
  # PR 3108 dominikl 'Fixed bug ChannelSlider (rendering settings)'
  # PR 3109 dpwrussell 'Disable keyboard navigation (up, down, left, right) for jquery tabs'
  # PR 3115 sbesson 'CLI admin diagnostics: only check readability of var folder'
  # PR 3117 dominikl 'Bugfix: Paste pending rendering settings'
  # PR 3118 ximenesuk 'Flake8 OmeroFS'
  # PR 3121 bpindelski 'Make sure @omero_host@ is never present (fix #12555).'
  # PR 3122 manics 'Customise Windows service name: omero.windows.servicename'
  # PR 3124 aleksandra-tarkowska 'refactoring share templates to remove duplicates'
  # PR 3126 will-moore 'Robot test fixes'
  # PR 3127 will-moore 'Batch Annotate with Read-only'
  # PR 3128 rleigh-dundee 'OmeroCpp: Disable remaining integration search test'
  # PR 3130 bpindelski 'Reduce no. of broken integration tests.'
Conflicting branches (not included):
  # jburel:qa-submit-new

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 1362 melissalinkert 'Make FormatReader's RandomAccessInputStream transient' (label: breaking)
  # PR 1383 LeeKamentsky 'Fix im3 metadata' (user: LeeKamentsky)
  # PR 1309 melissalinkert 'Allow tile-based access of large JPEG-2000 images' (exclude comment)
  # PR 1161 sommerc 'Initial CellH5 Reader class' (user: sommerc)
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (label: exclude)
  # PR 1379 melissalinkert 'New units' (label: breaking)
  # PR 1384 melissalinkert 'OME-TIFF: return blank planes if the corresponding file does not exist' (status: error)
  # PR 1015 qidane 'Messy binary' (exclude comment)
  # PR 1177 rleigh-dundee 'specification: Add metadata for HDF5 embedding' (exclude comment)
  # PR 1365 ctrueden 'PrairieView 5.2 fixes and improvements' (label: exclude)
  # PR 1366 ctrueden 'Miscellaneous cleanup' (label: exclude)
  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (label: exclude)
Updating 5706a61..83888cc
Previously merged:
  # PR 1378 melissalinkert 'DICOM: also use the pixel sign tag to detect the pixel type'
  # PR 1376 sbesson 'Developer doc restructuring'
  # PR 1377 hflynn 'Replace BigTiff sample link'
  # PR 1374 rleigh-dundee 'C++: Collected small fixes'
  # PR 1373 rleigh-dundee 'cpp: test: Only test multi_array assertions for release builds'
  # PR 1369 sbesson 'Document usage of setSeries() and getIndex() in MATLAB documentation'
  # PR 1371 rleigh-dundee 'C++: Read and write all pixel types and validate all tags and pixel data'
  # PR 1296 melissalinkert 'Add test for getRequiredDirectories'
  # PR 1370 rleigh-dundee 'cpp: Adapt to Boost 1.56 optional changes'

Merged PRs:
  # PR 1375 rleigh-dundee 'C++: Documentation updates'
  # PR 1381 melissalinkert 'Parse physical pixel sizes from CellSens .vsi datasets'
  # PR 1382 melissalinkert 'Leica LIF: fix support for new files with 0 padding'

Repository: ome/scripts
Already up-to-date.

Repository: openmicroscopy/ome-documentation
Updating 99514d2..86c72bc
Previously merged:
  # PR 1013 snoopycrimecop 'Update auto-generated properties'
  # PR 1009 manics 'Update Linux walkthrough to 5.0.5 (rebased onto develop)'
  # PR 1012 sbesson 'Add documentation for new OME-help-release job'
  # PR 1011 sbesson 'Redirect Python API documentation to new Sphinx-generated pages'
  # PR 1010 hflynn 'Minor tidying of contributing docs'
  # PR 1008 hflynn 'Adding link to secvuln on sysadmin security page (rebased onto develop)'

Merged PRs:
  # PR 990 kennethgillen 'for users who have compiled isapi_wsgi on x64'
  # PR 1014 bpindelski 'Ldap.txt: cleanup and update column names.'
  # PR 1015 hflynn 'Remove references to OMERO.editor'

Generated by OME-5.1-merge-push#531 (http://ci.openmicroscopy.org/job/OME-5.1-merge-push/531/)