Updated year on the copyright (missing bits)
Changed name of lnux shell command executor class and moved it to util package
Added extra exception if delete operation failed
Added extra exception if passed null file
Last minute change that would fix the issue with large title when submitting to AE
Added version field for the submissions; Added version 1.1 of experiment profile (seq raw data with md5)
Merge branch 'kolais' of github.com:arrayexpress/annotare2 into kolais
Reformatted classes to align with a common style
Reformatted classes to align with a common style
Added association of FTP files (where they are not copied to data store). Also reworked file copy messaging
Removed extra MD5 digest assignment
Added a delay sending file copy message to allow for DB record creation; also tuned in settings for redelivery
Added moving of all associated files on submission; next step is to leave raw data files
Added files availability checking step on validation
Removed NPE prospect when do file checking
Associated files will not be copied over to submission tracking
Associated FTP files (to be stored) will be copied rather than moved
Added startup migration task (currently migrates 1.0 to 1.1)