Cherry-picked cytoscape dependency removal from 1.2 branch:

- Refixed apps
- Replaced cytoscape dependency with several smaller dependencies. (org.jdesktop.swingx, colt)

Conflicts:
	MedSavantClient/pom.xml
	MedSavantPlugins/medsavant.secondary/src/main/java/medsavant/secondary/SecondaryFindings.java
	MedSavantPlugins/medsavant.secondary/src/main/java/medsavant/secondary/SecondaryPanel.java