Implement getopt and add gitignore -- change file name to assignment5.py
Merge pull request #1 from ianks/getopt

Implement getopt and add gitignore -- change file name to assignment5.py
Stub out hmm, vertbati, and run_verbati
Merge pull request #2 from ianks/stub-out

Stub out hmm, vertbati, and run_verbati
Merge branch 'master' into renaming-org

* master:
  Stub out hmm, vertbati, and run_verbati
  Implement getopt and add gitignore -- change file name to assignment5.py
Remove pyc files