STYLE: uncrustify, etc


git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4677 4d348492-3962-11de-aa85-65a2020054a3
ENH: improved the uncrustify script


git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4678 4d348492-3962-11de-aa85-65a2020054a3
COMP: added missing definitions in header which caused gcc errors

git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4679 4d348492-3962-11de-aa85-65a2020054a3
COMP: definitions were still incorrect

git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4680 4d348492-3962-11de-aa85-65a2020054a3
DOC: updated elastix copyright notice after comments from Leo


git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4681 4d348492-3962-11de-aa85-65a2020054a3
DOC: added corporate and individual cla's

in preparation to a move to the apache 2.0 license


git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4682 4d348492-3962-11de-aa85-65a2020054a3
DOC: added missing elastix copyright headers

In case of modifications the elastix copyright notice should be added as well


git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4685 4d348492-3962-11de-aa85-65a2020054a3
DOC: consistent use of lower case CMake commands

using a python script


git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4700 4d348492-3962-11de-aa85-65a2020054a3
COMP: gcc complaints

git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4702 4d348492-3962-11de-aa85-65a2020054a3
DOC: minor


git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4705 4d348492-3962-11de-aa85-65a2020054a3
ENH: svn properties


git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4709 4d348492-3962-11de-aa85-65a2020054a3
COMP: gcc warnings

git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4711 4d348492-3962-11de-aa85-65a2020054a3
DOC: add copyright notice from ITK

As discussed with Richard Beare


git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4734 4d348492-3962-11de-aa85-65a2020054a3
ENH: add sanity check for direction cosines


git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4747 4d348492-3962-11de-aa85-65a2020054a3
DOC: change SSD into MSD

After comment of Tom Knoops

git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4776 4d348492-3962-11de-aa85-65a2020054a3
BUG: int should be float


git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4798 4d348492-3962-11de-aa85-65a2020054a3
ENH: adding the DistancePreservingRigidityPenalty term

Contributed by J. Kim, M. M. Matuszak, K. Saitou, and J. Balter

Based on their paper
Distance-preserving rigidity penalty on deformable image registration of multiple skeletal components in the neck
Medical Physics, vol. 40, no. 12, pp. 121907-1 - 121907-10, December 2013


git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4800 4d348492-3962-11de-aa85-65a2020054a3
DOC: include search bar


git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4801 4d348492-3962-11de-aa85-65a2020054a3
ENH: cleanup of DistancePreservingRigidityPenalty

Remove unused member variable
Fixed style, several
Fixed bug in case of non-3D images


git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4802 4d348492-3962-11de-aa85-65a2020054a3
COMP: fixed gcc errors

git-svn-id: https://svn.bigr.nl/elastix/trunkpublic@4803 4d348492-3962-11de-aa85-65a2020054a3