Ensure exporter::progressive is indicated as dependency
Prevent problems when reinstalling if pathed perl doesn't match /usr/bin/perl version
as we can't tell if *.gz is razf or gzip go for the safest option and decompress ready for bamsorts nm/md correction
add relevant support for md/nm recal
Add ability to allow stdout/err redirect to file when Threads processing to be disabled
Update biobambam and bwa dependencies
Prevent race condition on decompression of ref
Release 1.0.2, updated docs, version and upgrade path
Merge pull request #32 from ICGC-TCGA-PanCancer/dev

Dev - merge 1.0.2 for release