no longer storing kmer temp files in output for storage reasons;
Merge branch 'master' of https://github.com/mitenjain/nanopore
fixed indel NaN plots bug
tests are all working for me; so is M13, including qualimap. How about you guys?
no longer storing sorted sam for testing; can't seem to reproduce problems benedict had? mpileup does take hours for larger files, but eventually finishes
Merge pull request #2 from mitenjain/ian_dev

Ian dev