Centroid IT
cleanup
cleanup
cleanup
cleanup
number of states
pep8
new tmat simulator

 - start from 'unfolded' states
 - calculate first IT
 - record ""number of states"" = number of non-trimmed states
Fixed implied timescale saving in tmat and changed clustering
for muller. (Increased distance cutoff)
organize
Merge pull request #4 from mpharrigan/frombiox

Frombiox