Added new PepXML project. Reworked proteases to avoid having the user write their own regex
Added stage system for writing pep xml files
Fixed bug in chemical formula generator (min formula) added missed clevage support for proteases
After merge
Fixed GetIsotopes bug
Fixed isotope bug
Merge branch 'develop' of github.com:dbaileychess/CSMSL into develop
Added ChemicalFormulaGeneratorTestExample
Fixed merging
Major updates to many parts
Removed mzidentml
Merge branch 'develop'