Initial implementation of query engine specific launching
Flip QE checkout to https
Updating the /datastore, putting it on /mnt for Amazon
Changing the location of /datastore to deal with small root partition, using first ephemeral drive is available
Merge branch 'develop' into feature/queryengine
Merge remote-tracking branch 'origin/feature/queryengine' into feature/queryengine
Updated the template
Updating the worker script to correctly mount /mnt/datastore
Just making sure the worker nodes and head node all have /datastore available (which is just a symlink to /mnt/datastore)
Merge pull request #5 from SeqWare/feature/queryengine

Feature/queryengine  Looks OK and launches a node but did not wait for full provisioning process.  Making the assumption it's OK.
Merge remote-tracking branch 'origin/feature/glassfish' into feature/glassfish
Merge pull request #6 from SeqWare/feature/glassfish

Feature/glassfish So I started up a test instance on Amazon to try this out.  I'm going to assume it works OK and will merge the branch, it looks low risk.
Merge remote-tracking branch 'origin/feature/sge_workers' into feature/sge_workers
Merge pull request #9 from SeqWare/feature/sge_workers

Feature/sge workers  I currently have a 2 node cluster launching on AWS to test this.  In the mean time the changes look OK so I'm going to merge this into develop.
Merge remote-tracking branch 'origin/feature/jmg_separate_logs' into feature/jmg_separate_logs
Merge pull request #11 from SeqWare/feature/jmg_separate_logs

Re-enable logging (to separate files for each machine).  I'm (Brian) now launching a host on AWS to test to see if this works OK.  Looks like a very small change so I'm going ahead with the merge.
I fixed a problem with the helloworld archetype generate step. I also changed the way multiple log files are handled, they are now output to the target working dir so multiple launchs of clusters can happen at the same time.
Merge branch 'develop' into feature/separate_db_ws_servers

Conflicts:
	templates/server_setup_scripts/seqware/hello-world-workflow.sh
	vagrant_cluster_launch.pl