Added --precise flag to getStatistics.R script to increase precision of statistics.

We need this for the MiSeq... Ask Eddy de Boer (or Lennart or me) for more details.
Dirk's first commit
fixed protocols - create inhouse projects and missing RVersion
Merge pull request #129 from georgebyelas/master

fixed protocols - create inhouse projects and missing RVersion
fixed runid
now added the correct variable
Merge pull request #130 from RoanKanninga/master

fixed runid
Updated 5GPM pipeline: 1. Updated in-house_parameters_5gpm.csv for new BED file and derived interval files. 2. Updated 3 protocols to use the standard Targets + 20bp flanking sequence BED file instead of an additional one with 100 bp flanking sequence. 3. Removed comment lines with SVN keywords from all protocols as we switched to Git.
Updated 5GPM pipeline for GCC cluster: 1. Updated in-house_parameters_gcc.csv for new BED file and derived interval files. 2. Updated 3 protocols to use the standard Targets + 20bp flanking sequence BED file instead of an additional one with 100 bp flanking sequence. 3. Removed comment lines with SVN keywords from all protocols as we switched to Git.
Merge pull request #131 from pneerincx/master

Updated 5GPM pipeline
deleted a typo, hopefully this will fix the VariantCalling
Merge pull request #132 from RoanKanninga/master

deleted a typo, hopefully this will fix the VariantCalling
fixed fq.gz.md5 links + fix for when Barcode == None
Merge pull request #133 from RoanKanninga/master

fixed fq.gz.md5 links + fix for when Barcode == None
fixed the multiple projects issue, the wrong worksheet was used
Merge pull request #134 from RoanKanninga/master

fixed the multiple projects issue, the wrong worksheet was used
loading R/2.14.2 version for GATK/1.2-1-g33967a4 UnifiedGenotyper
Merge pull request #135 from Gerbenvandervries/master

loading R/2.14.2 version for GATK/1.2-1-g33967a4 UnifiedGenotyper
changed protocols, edited parameter tmpvariables to tmpfolders/files created by a function in the header
removed unused tmp folders