fix the input files copy.

some typos: i insteadof $i
was not copying the value inside the _chrisInput_ directory

todo: make name unique in the _chrisInput_ dir
todo: update command
make the input values unique or do not duplicate it if already there

how?
mimic original file system with _chrisInput_ as a root
fix typo which was resulting on plugins not running
command to run the plugin updated and correct directories are copied
update the most commonly used plugins