Changed parsing of settings file to be (\s+) rather than (\t)
Settings file can now be (\s+) delimited.
Logger level back to info, to avoid multi-GB log files. Change it to DEBUG if you must.
Updated the SegmentMaker to use an iterator for each printable fragment.
removed all SQL from PanGenome
removed sql from Panseq.pm
Removed DBI
Printing to table format is working
Fixed bug where if core, was re-writing entire result hash, instead of the SNP portion.
This was causing the binary results to be absent for any result that was core.
Table files now correctly generated
Added option to CombineFilesIntoSingleFile to keep the header of only the first file.
This is disabled by default.
Removed headerFlag
Removed table files
pan_genome.txt is now correctly created
Deal with filehandles as group, rather than individually
core_snps.txt now printed properly
Updated _printConversionInformation to use _orderedNames
For phylip creation, each genome gets a separate temp file and successive binary/snp data is added.
Based on the number of cores, there are multiple files per genome. These are combined in a constant order.
Phylip files are now correctly generated
simplified the binary hash assignment