Initial big Rework and Cleanup

- Fixed XenoReliquary items, added TODO folder with x32 texture to
transmute on one texture(only salamander_eye).
- Fixed WR-CBE folder and items name. Added TODO.
- Fixed warpbook and added TODO.
- Fixed tmechworks folders and added TODO.
- Fixed tubestaff, I don't know but his folder was in wrong
folder(immibis folder). Added TODO.
- Added TODO folder for Steve's Factory Manager
- Fixed ProjectRed items, removed unused texture, added TODO folder and
mrtjp core, because ProjectRed is now dependent of MrtjpCore, and it
contains gui texture. Added TODO folder.
- Added NEI TODO.
- Fixed mystraft, added TODO folder.