Initial implementation through blueprints/Neo4J. Not ready for execution.
Changes the name for the GraphPair object.
Changes the method used for the leafs and matched leafs and originals to use more gremlin based queries.
Removes unnecessary connectivity inspector.
Removes update leafs step that was executing every single time an edge was added.
Necessary refactors that were not performed when producing the InteractionGraph interface.
Adds exclusion from of redundant lucene-core (removed lower version used by mdk).
Passes leaf recording test. Ids where not handled as expected, which required some rearrangements.
Adds targets awareness to the Graph
Adds the path writer interface and the GraphMLPathWriter.
refactoring of graph class to interface and addition of interaction identifier.
Changes addEdge method signature.
Changes tests for high resemblance.
Adds toString()
Uses the path writer interface.
Uses the GraphML writer impl.
Adds the MiQL query text for edges.
Adds graph annotator interface and uniprot impl.
downgrades uniprotjapi to 2014.01.
Adds again the uniprot japi usage and improves output.