Fixed: Used wrong groupId for getting ROI count
Move integration library under components/tests
Fix test setup configuration to use library in new location
Merge pull request #3284 from dominikl/roi_count_fix

Fixed: Used wrong groupId for getting ROI count
Fix setup files
revert changes to full text indexer
create new SQL for moving from _updated_annotations to eventlog

should work even with serializable isolation
update SqlAction for new REINDEX PL/pgSQL function
have full text indexer thread run new function in separate transaction

do not want tables wholly locked during whole indexing process
add new function to schema
add new function to upgrade scripts
merge develop -Dnone -Ibreaking -Eexclude -Ssuccess-only: PR 3286 (fix #11182: avoid Cartesian product of REINDEX eventlog entries)
merge develop -Dnone -Ibreaking -Eexclude -Ssuccess-only: PR 3296 (Integration library)
merge develop -Dnone -Ibreaking -Eexclude -Ssuccess-only

Repository: openmicroscopy/openmicroscopy
Excluded PRs:
  # PR 3042 will-moore 'Download dataset project' (user: will-moore)
  # PR 3294 jburel 'Log file' (user: jburel)
  # PR 3285 will-moore 'Thumbnail by section' (user: will-moore)
  # PR 3293 joshmoore 'Set LDAP in OMEROGateway' (user: joshmoore)
  # PR 2363 dominikl 'Java Gateway API' (label: exclude)
  # PR 3208 sbesson 'Update the OMERO install script to test Web login with CSRF (rebased onto develop)' (user: sbesson)
  # PR 3237 zeb 'Fix web attachment error msg develop' (user: zeb)
  # PR 3236 will-moore 'Fix 'Save to All' in Preview panel' (user: will-moore)
  # PR 2182 joshmoore 'Read only flag' (user: joshmoore)
  # PR 3086 will-moore 'Create image by tiling 12459' (user: will-moore)
  # PR 3098 aleksandra-tarkowska 'Metadata reimport' (user: aleksandra-tarkowska)
  # PR 3290 joshmoore 'Units/Windows kludge: camelcase Pascal' (user: joshmoore)
  # PR 3249 manics 'Tables set all metadata 12606' (user: manics)
  # PR 3264 jburel 'Support for collapsing unique light paths (rebased onto develop)' (user: jburel)
  # PR 3289 jburel 'CLI error report' (user: jburel)
  # PR 3295 dominikl 'MapAnnotation tests ' (user: dominikl)
  # PR 3291 mtbc 'override for move to unlink non-orphan annotations that others linked' (user: mtbc)
  # PR 3181 joshmoore 'Update to Hibernate 3.6 (See trac2570)' (label: exclude)
  # PR 2585 aleksandra-tarkowska 'making time_zone and first_day_of_week configurable' (exclude comment)
  # PR 3282 will-moore 'Make movie web' (user: will-moore)
  # PR 3292 mtbc 'keep our annotations on others' data' (user: mtbc)
  # PR 3141 dpwrussell 'jstree upgrade (Functionality Review Only)' (status: failure)
  # PR 3000 jballanc 'Update artifacts for Lucene, Hibernate, and Spring' (user: jballanc)
Already up-to-date.

Merged PRs:
  # PR 3286 mtbc 'fix #11182: avoid Cartesian product of REINDEX eventlog entries'
  # PR 3296 sbesson 'Integration library'

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 1161 sommerc 'Initial CellH5 Reader class' (user: sommerc)
  # PR 1497 melissalinkert 'LZW: fix one more off-by-one' (user: melissalinkert)
  # PR 1177 rleigh-dundee 'specification: Add metadata for HDF5 embedding' (exclude comment)
  # PR 1309 melissalinkert 'Allow tile-based access of large JPEG-2000 images' (exclude comment)
  # PR 1489 sbesson 'Use Javadocs rather than source code links when possible' (user: sbesson)
  # PR 1443 joshmoore 'Genshi ZIP' (user: joshmoore)
  # PR 1442 bramalingam 'Update roi handler' (user: bramalingam)
  # PR 1493 melissalinkert 'Add a page that gives an overview of each repository component' (user: melissalinkert)
  # PR 1480 melissalinkert 'Imspector OBF: support version 5 stacks' (user: melissalinkert)
  # PR 1407 melissalinkert 'TIFF: fix plane count calculation for pyramids with multiple planes' (user: melissalinkert)
  # PR 1498 sbesson 'Ant target reviews' (user: sbesson)
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (user: melissalinkert)
  # PR 1381 melissalinkert 'Parse physical pixel sizes from CellSens .vsi datasets' (user: melissalinkert)
  # PR 1426 qidane 'Initial Rendering Definitions schema' (exclude comment)
  # PR 1495 melissalinkert 'ImageJ: enable min/max calculation if any series contains float data' (user: melissalinkert)
  # PR 1479 qidane 'Updated XSLT for units conversion' (exclude comment)
  # PR 1488 bjoernthiel 'Read up to stack version 5' (user: bjoernthiel)
  # PR 1015 qidane 'Messy binary' (exclude comment)
  # PR 1492 sbesson 'Command line profiling' (user: sbesson)
  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (user: melissalinkert)
Already up-to-date.

Repository: ome/scripts
Excluded PRs:
  # PR 94 will-moore 'Make Movie script handles units for scalebar' (user: will-moore)
Already up-to-date.

Repository: openmicroscopy/ome-documentation
Excluded PRs:
  # PR 1041 joshmoore 'Units documentation' (user: joshmoore)
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