updated stats output
removed old IBA attempts
Fix emission rates across states
fixed small bug with input_group
expected recombs must be > 0 or conversion to log space will fail
updated test file
Add labelling of indentical ancestors
Added date/time to stats output
Updated kickoff scripts to handle complete genomes
Small change to allow IBAs from counts greater than ancestor counts
rename input_group to input_strain
Added command line arguments
first attempts with dispy
Parallel processing with pp package working locally
Merge branch 'parallel' of https://github.com/dmalmer/ancestor_hmm into parallel

Conflicts:
	hmm/hmm_main.py