Improved reporting for GTF parsing errors
Making all junction tables more similar for consistency
Changes to NEWDTAB, optimizing D-A transition probs
Housecleaning, removing unused files / code
Reporting changes to find bug in spankijunc
Fixed error with 1bp introns
Now skipping small gaps < 4 bp, instead of treating them as introns
Minor edit
Minor edit
Minor edit
Speedup to D-A transition, error in mmposprob in simulate_transcripts
Added counter and error reporting to junccomp
Changes to read simulator
Changed version number in setup.py
Final edits before new release