fix two remaining 'high impact outstanding' issues as found by coverity
updated license statement per @mr-c
Merge pull request #103 from ctb/protocols_update

initial renames & tests for three important sandbox scripts
don't ignore possible errors related to posix_fadvise
fixed extra space bug in interleave-reads.py FASTQ output
updated write-trimmomatic for new script names
initial release guidelines
Merge branch 'bleeding-edge' of github.com:ged-lab/khmer into coverity-fixes-20130819
medium level coverity inspired fixes
Merge pull request #125 from ged-lab/coverity-fixes-20130819

Coverity fixes 20130819
It compiles, and sort of works
Merge branch 'bleeding-edge' of https://github.com/ged-lab/khmer into bleeding-edge
Resolved conflict with makefile
Working (if threadbare) implementation of aligning reads to the DBG based on Jason Pell's work
Updated aligner.o => read_aligner.o
Merge branch 'bleeding-edge' of github.com:ged-lab/khmer into bleeding-edge
Merge pull request #79 from waffleio/master

Convert README.txt to markdown file; add waffle.io badge
Typos corrected and Copyright message added for .py files
A few typos have been corrected and all .py files now have the copyright
header. Follow up commits will have copyright header on .cc, .hh and .sh
file as well.
Minor change in copyright header, shebang removed from a few files 

Changed copyright header from "This script is" to "This file is".
Removed the '#!/use/bin/env python' line from /python, /tests and
subdirectories.
Added copyright headers to files

Added Copyright Headers to all .c, .cc, .cpp, .hh, .h, .r, .m and .sh
files, excluding files in /lib/