improve some error messages
Merge branch 'master' of github.com:beaumontlab/antonie
turns out that passing constructing & destroying a std::function costs 24ns.
This in itself is not that dire until you do it a billion times.
add snippet of DNA to regions
plus display the snippet
digisplice is stored as inspiration, but not generally useful (yet)
Merge branch 'master' of github.com:beaumontlab/antonie
add stitcher
add storing index for stitcher, add really ending if we reached our goal, add synten grph
fix compilation on clang (I think), by no longer doing threads
further clang fixes
lots of weird de-novo attempts!
make the de novo stuff work
add invert too, fastqgrep and paired fastqgrep
make sure we install our new tools
Merge branch 'master' of github.com:beaumontlab/antonie into metfout
its a wip
add GC/cov graph
fix up stitcher, make pfqgrep properly match 'superoverlapping pairs'
add descriptions to everything