Edited the command line arguments

The model command line argument is now required.
The location argument is changed to a more standerd -f or --folder.
Added archive argument, and parameters and values.

Added the getter for archive argumet used in archive download script.
Changed the arguments for the analysis script so that a list of
parameters to plot and a list of their real values should be provided.
Simulation analyse now plots arbitrary columns

The simulation analysis script now plots a list of parameters provided
together with their actual values.
Script to download sim archives from brutus

Given the path to the archive the script downloads the archive to runs/
Merge branch 'master' of github.com:junniest/TBSimulationStudy