Added script that finds intergenic regions
Tweaked Programs for cuda box

Added some statistics for perm analysis and changed directories in other
files.
Finally fixed my mistake

It doesn’t remove the gene regions it now finds the promoters
Necessary Changes

Forgot the compliment strand. Gotta love stupid mistakes.
Added changes

To avoid the hassle of changing paths added boolean.
Eureka Moment

I believe that I have finally figured out my problem.
Hoping to Resolve formatting issues

Windows….
Solved  Error

This file wasn't needed in the first place
Permutation Analysis Almost Complete
MUST Redesign.... Big flaw in code.
Correct Design Now to Debug
Final Touches Made. Now to merge with main
Merge branch 'Promoter-Search'

Updated the main branch for the correct code