modified:   gatk.qpp.scala
	    Debugged, changed the input file from bamFiles to myBam, and changed from List[File] to File

modified:   gatk.qpp.sh
	    Live run, instead of dry run

new files:   q.hc.scala, q.hc.sh
    These two Queue scripts run Happlotype caller on .bqsr.bam files.  Currently functioning.