Adding manual qsub script for testing the end-to-end pipeline
Merge branch 'master' of ssh://github.com/kellrott/tcga_realign into cwilks2
Fixing the synapseICGCMonitor getResultID command
Merge branch 'master' of ssh://github.com/kellrott/tcga_realign into cwilks2
moved all subdir py scripts into pyscripts