[FIX] Changed behaviour for hostToVirtualPosition, when host pos is greater or equal to the length of the host.
[DOC] Minor changes.
[INTERNAL] Removed the old cmd parser
[FIX] Build System: renamed old project names
[INTERNAL] Demos: ported bam_stats to argparse
[FEATURE] Converting the members of GenomicRegion to __int32.
[INTERNAL] Demos: ported annotation_converter to argparse
[INTERNAL] Demos: ported bam_stats to argparse
[INTERNAL] Demos: ported bamutil to argparse
[DOC] Removing links to trac.seqan.de.
[INTERNAL] Demos: ported filter_sam to argparse
Merge pull request #732 from holtgrewe/feature/fix-691

[DOC] Removing links to trac.seqan.de.
[INTERNAL] Demos: removed sam2svg (was using cmdline parser)
[INTERNAL] Demos: removed bam_stats (was using cmdline parser)
[INTERNAL] Razers 3: ported additional tools to argparse
[API] Motif Finding: removed the whole module
[FIX] Fixing issue with INVALID_ID in genomic_region.h
[INTERNAL] Removing old, crufty DDDoc support file.
[INTERNAL] Some helper file fixing.
[INTERNAL] Moving files from misc.