Fixed issue in __xqf_str_parse_to_rdf_box

__xqf_str_parse_to_rdf_box() will never suppress errors when wrong
string is an argument to convert to virtrdf:Geometry
Fixed when deleted, keep nth in order for ldpr name
Fixed issue with LDP acl
Fixed issue with LDP perms

When public read via WAC then set public read flag in unix like
perms when doing patch update content of the physical turtle resource