merge develop -Dnone -Ibreaking -Eexclude -Sno-error: PR 1362 (Make FormatReader's RandomAccessInputStream transient)
merge develop -Dnone -Ibreaking -Eexclude -Sno-error

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 1386 melissalinkert 'Zeiss CZI: fix dimension calculations when expected planes are missing' (user: melissalinkert)
  # PR 1391 hflynn 'Fix Analyze 7.5 specification link' (user: hflynn)
  # PR 1365 ctrueden 'PrairieView 5.2 fixes and improvements' (user: ctrueden)
  # PR 1161 sommerc 'Initial CellH5 Reader class' (user: sommerc)
  # PR 1015 qidane 'Messy binary' (exclude comment)
  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (user: melissalinkert)
  # PR 1384 melissalinkert 'OME-TIFF: return blank planes if the corresponding file does not exist' (user: melissalinkert)
  # PR 1387 sbesson 'Fix testng JAR for Bio-Formats tools components' (user: sbesson)
  # PR 1385 rleigh-dundee 'C++: Add TIFF reader' (user: rleigh-dundee)
  # PR 1382 melissalinkert 'Leica LIF: fix support for new files with 0 padding' (user: melissalinkert)
  # PR 1394 rleigh-dundee 'CMake: Fixes for fatal warnings and doxygen' (user: rleigh-dundee)
  # PR 1366 ctrueden 'Miscellaneous cleanup' (user: ctrueden)
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (user: melissalinkert)
  # PR 1383 LeeKamentsky 'Fix im3 metadata' (user: LeeKamentsky)
  # PR 1177 rleigh-dundee 'specification: Add metadata for HDF5 embedding' (exclude comment)
  # PR 1309 melissalinkert 'Allow tile-based access of large JPEG-2000 images' (exclude comment)
  # PR 1381 melissalinkert 'Parse physical pixel sizes from CellSens .vsi datasets' (user: melissalinkert)
Updating ec58965..e5cb440
Previously merged:
  # PR 1390 simleo 'Fix for unit tests run with ant 1.9'
  # PR 1388 rleigh-dundee 'C++: Update NDEBUG usage in death tests'

Merged PRs:
  # PR 1362 melissalinkert 'Make FormatReader's RandomAccessInputStream transient'

Generated by OME-5.1-breaking-push#148 (http://ci.openmicroscopy.org/job/OME-5.1-breaking-push/148/)