updated skeleton:
    modified:   skeleton/handles/myJuliaModule.handles
    modified:   skeleton/handles/myMatlabModule.handles
    modified:   skeleton/handles/myPythonModule.handles
    modified:   skeleton/handles/myRModule.handles

updated APIs (hdf5 files are created by jterator program):
    modified:   src/julia/jterator/api/io.jl
    modified:   src/python/jterator/api/io.py
    modified:   src/r/jterator/api/io.R
    deleted:    src/matlab/+jterator/+api/+io/buildhdf5.m
    modified:   src/matlab/+jterator/+api/+io/readinputargs.m
    modified:   src/matlab/+jterator/+api/+io/writeoutputargs.m
    modified:   src/matlab/+jterator/+api/+io/writeoutputtmp.m

updated version of mscript in Julia:
    modified:   src/julia/jterator/api/mscript.jl
    deleted:    src/python/jterator/api/mscript.py
    deleted:    src/python/jterator/api/pipe_yaml_json.py

new matlab package from matlabcentral:
    new file:   src/matlab/+popen/html/popenr_demo.html
    new file:   src/matlab/+popen/html/popenr_demo.png
    new file:   src/matlab/+popen/html/popenr_demo_01.png
    new file:   src/matlab/+popen/piano.mp3
    new file:   src/matlab/+popen/popenr.c
    new file:   src/matlab/+popen/popenr.mexmaci
    new file:   src/matlab/+popen/popenr.mexmaci64
    new file:   src/matlab/+popen/popenr_demo.m
    new file:   src/matlab/+popen/popenw.c

functionality of jterator program expanded:
    new file:   src/python/jterator/checker.py
    modified:   src/python/jterator/module.py
    modified:   src/python/jterator/runner.py

removed outdated R package:
    deleted:    src/r/DESCRIPTION
    deleted:    src/r/jterator/DESCRIPTION
    deleted:    src/r/jterator/NAMESPACE
    deleted:    src/r/jterator/R/build_hdf5.R
    deleted:    src/r/jterator/R/check_input_args.R
    deleted:    src/r/jterator/R/get_handles.R
    deleted:    src/r/jterator/R/jterator-internal.R
    deleted:    src/r/jterator/R/read_input_args.R
    deleted:    src/r/jterator/R/read_input_values.R
    deleted:    src/r/jterator/R/write_output_args.R
    deleted:    src/r/jterator/Read-and-delete-me
    deleted:    src/r/jterator/jterator/DESCRIPTION
    deleted:    src/r/jterator/jterator/INDEX
    deleted:    src/r/jterator/jterator/Meta/Rd.rds
    deleted:    src/r/jterator/jterator/Meta/hsearch.rds
    deleted:    src/r/jterator/jterator/Meta/links.rds
    deleted:    src/r/jterator/jterator/Meta/nsInfo.rds
    deleted:    src/r/jterator/jterator/Meta/package.rds
    deleted:    src/r/jterator/jterator/NAMESPACE
    deleted:    src/r/jterator/jterator/R/jterator
    deleted:    src/r/jterator/jterator/R/jterator.rdb
    deleted:    src/r/jterator/jterator/R/jterator.rdx
    deleted:    src/r/jterator/jterator/help/AnIndex
    deleted:    src/r/jterator/jterator/help/aliases.rds
    deleted:    src/r/jterator/jterator/help/jterator.rdb
    deleted:    src/r/jterator/jterator/help/jterator.rdx
    deleted:    src/r/jterator/jterator/help/paths.rds
    deleted:    src/r/jterator/jterator/html/00Index.html
    deleted:    src/r/jterator/jterator/html/R.css
    deleted:    src/r/jterator/man/build_hdf5.Rd
    deleted:    src/r/jterator/man/check_input_args.Rd
    deleted:    src/r/jterator/man/get_handles.Rd
    deleted:    src/r/jterator/man/jterator-package.Rd
    deleted:    src/r/jterator/man/read_input_args.Rd
    deleted:    src/r/jterator/man/read_input_values.Rd
    deleted:    src/r/jterator/man/write_output_args.Rd

renamed required keys in handles:
    modified:   tests/mock/testPipe_example/handles/IdentifyPrimary.handles
    modified:   tests/mock/testPipe_example/handles/IllumCorr.handles
    modified:   tests/mock/testPipe_example/handles/MeasurePrimary.handles
    modified:   tests/mock/testPipe_example/handles/Plot.handles
    modified:   tests/mock/testPipe_example/handles/PrimeRawData.handles
    modified:   tests/mock/testPipe_example/handles/Whatever.handles

modules now all have .jt extension irrespective of used language:
    renamed:    tests/mock/testPipe_example/modules/IdentifyPrimary_jt.m -> tests/mock/testPipe_example/modules/IdentifyPrimary.jt
    renamed:    tests/mock/testPipe_example/modules/IllumCorr_jt.m -> tests/mock/testPipe_example/modules/IllumCorr.jt
    renamed:    tests/mock/testPipe_example/modules/MeasurePrimary_jt.py -> tests/mock/testPipe_example/modules/MeasurePrimary.jt
    renamed:    tests/mock/testPipe_example/modules/Plot_jt.R -> tests/mock/testPipe_example/modules/Plot.jt
    renamed:    tests/mock/testPipe_example/modules/PrimeRawData_jt.m -> tests/mock/testPipe_example/modules/PrimeRawData.jt
    renamed:    tests/mock/testPipe_example/modules/Whatever_jt.jl -> tests/mock/testPipe_example/modules/Whatever.jt
    modified:   tests/mock/testPipe_example/test.pipe