remove unused template toolkit file
Added support for short arm designs in ProcessTree

Added additional parameters for setting window size and overlap in
OligoSelection
Updated to return chr_name to caller
Created plugin for chromosome name - id conversion
add toggle buttons to show or hide non accepted epd / piq well rows on gene summary page
remove logging output for javascript
factor out tt code for drawing crispr qc alignments into seperate tt file
add crispr qc alignment to accepted PIQ wells, add new crispr qc tab to show epd crispr qc alongside its PIQ crispr qc if available
can not use genotyping_info method on well to grab qc data for piq wells, it goes back to the accepted EPD ancestor well to get the results, search specificaly for the correct qc well now
make it more clear that we only show accepted crispr qc results
add note about the genotyping_info subroutine and its uses
add gene_crispr_es_qc page, shows the ep_pick and piq crispr qc data for a given gene
add link in menu bar to gene crispr es qc page
factor out crispr es qc view code into seperate template so it can be used in both the crispr es qc run view and the gene crispr es qc view
Add accepted information, remove table when no data, make PIQ qc rows
uniform colour
modify gene crispr qc view to stack all the child piq wells under the accepted ep_pick, do not want to duplicate ep_pick qc info
send in optional array ref of gene ids if we have this data
add design_wells method to design, returns all the design wells for the design
stop using summary table to gather crispr es qc data for gene, the data should be up to date
fix code to not show table if no results