Reducing tophat to only two run scripts, now that Barbara Wold says to use ERCC spike-ins on her data.  To be clear WSC spike-ins should be a superset of ERCC spike-ins.
Merge branch 'master' of https://github.com/mmaddren/uniformAnalysis
Preparations for the brave new order: all ENCODE long-RNA-seq experiments use ERCC spike-ins.