Just imported Lizzies script and MetaData
Cleanned missing false detections
The code includes false detection analysis
Small differences in fish preprocessing and before changing Inshore script for data provided by Jesse
After including process of models on a weekly basis as well (for identifying dead fish)
Separate FishDead from FishClean. FishDead changed from one fish example to all fish as a set
After looking for the fish in Jesse's inshore array
Including both  model types and load/save functions to save the results
Run a six week window over model results and determine based in the 0.25 and the 0.5 critera if a fish is dead or not (fish must be dead in four of the six windows). Plot the results and save them in the shared folder
Dead fish algorithm using 0.5 crterion. Generates summary table and graph both methods for comparson.

Prepare analysis sets correctly the data.dat and grid file for each fish and each day
Construct all sigle fish data and grid files (as well as the directory structure) using 50m as the cell size. Saves data frames as RData
Create an independent SH file that contains shell instructions to run each model. SH file can be processed in parallel by ppss
Reads each report file available organises it and stores it in the hard drive as RData (not finished)
Check for error messages in the file output execution.txt and compilation.txt. Needs to be completed to read log files from ppss
Draft script to read and graph report data from one fish one day. Largely based on pedersen's script
Includes histogram of fish spans to decide a cutt-off date for ab-normal fish behaviour