Initial move to rename everything from metachecka2000 to checkm.
Setup CheckM for PyPi.
Modified headers of all files.
Add ignore file.
Moved to using Prodigal for ORF finding.
Add files for processing Prodigal and HMMER.
Added in bin statistics and flushed out output tables.
Initial implementation of plots. Defunct implementation of parallelizing coverage calculation.
Added unbinned, coverage, and profile commands.
Added start of marker gene position plot.
Updates to marker position plot.
Added runDistDeltaGC script.
Initial implementation of parallel coord plot.
Major update.
Post holiday commit. Seems there was some unchecked changes.
Initial implementation of analyze command.
Initial implementation of QA command.
Major update.
Initial implementation of tree command and scripts for inferring genome tree.
Initial implementation of tree and tree_qa commands.