Update dev_5_0 submodules

Repository: openmicroscopy/openmicroscopy
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Repository: openmicroscopy/bioformats
Updating cd2a5db..c0951f7
Merged PRs (fast-forward):
  # PR 943 melissalinkert 'Log the expected and actual values in failed metadata tests'
  # PR 953 melissalinkert 'Fix ImageScope links to match the committed documentation'
  # PR 955 mtbc 'change TeX Gyre font package so XeLaTeX can find it'
  # PR 947 hflynn 'Updating Aperio ImageScope weblink'
  # PR 940 melissalinkert 'Update POM version numbers to 5.0.1-SNAPSHOT'

Repository: ome/scripts
Already up-to-date.

Repository: openmicroscopy/ome-documentation
Updating 8947903..046baa2
Merged PRs (fast-forward):
  # PR 678 bpindelski 'Update OMERO.grid doc'
  # PR 686 mtbc 'change TeX Gyre font package so XeLaTeX can find it'
  # PR 680 jballanc 'Updated section on search re-indexing (see #11995)'
  # PR 677 sbesson 'Document Homebrew formula upgrade to 5.0.0'
  # PR 676 rleigh-dundee 'limitations: Document fileset log file workaround'

Generated by OMERO-5.0-latest-submods#338 (http://ci.openmicroscopy.org/job/OMERO-5.0-latest-submods/338/)
Fix command for retrieving filters.

Python raised this before:
> AttributeError: 'LightPathI' object has no attribute 'copyEmissionFilters'
Print Dichroic information.

Previously, the dichroic object was retrieved and ignored. ;)
Check if there was an actual Dichroic object returned.
Fix the dichroic type check.
Fix wrong indenting.
No fileAnnID in Metadata.py

BlitzGateway.loadOriginalMetadata always returns a None for
the first element of `om` for all data newly imported in OME5
since no extra file is created.
Fix example image names in import.py
Update strategy for retrying failed event indexing (broken)

This is an alternate strategy to the too simplistic strategy that was in
place before. The idea with this strategy is that every time a new event
ID is retrieved from the DB for the indexer, we write that ID as well as
the previous ID into a file on disk. At the end of a successful batch of
event indexing, we clear the previous ID property.

This way, when starting a new batch of events for indexing, we can know
that, if the previous ID property is set, then the last batch of
indexing did *not* complete successfully. Thus, we retry starting from
the previous ID instead of the current ID.

The reason that this is "broken" is that it seems that sometimes the
indexing process experiences an OOM exception, but it gets caught
somewhere in the executor stack. As a result, the FullTextIndexer
continues working on the next event ID without recognizing that the
previous event ID needs to be retried.
Merge pull request #2124 from snoopycrimecop/merge/dev_5_0/submodules

Regularly scheduled bump.
merge dev_5_0 -D org: PR 2086 (Record PersistentEventLogLoader event ID to file (see #11948))
merge dev_5_0 -D org: PR 2108 (release-src includes bioformats version metadata)
merge dev_5_0 -D org: PR 2133 (Renamed Cut,Copy,Paste,Unlink options (see trac #11880))
merge dev_5_0 -D org: PR 2134 (Unify command-line importer help)
merge dev_5_0 -D org: PR 2150 (Update logging jars)
merge dev_5_0 -D org: PR 2152 (Bug fix and improvement for the Metadata.py example. (rebased onto dev_5_0))
merge dev_5_0 -D org

Repository: openmicroscopy/openmicroscopy
Already up-to-date.

Merged PRs:
  # PR 2086 jballanc 'Record PersistentEventLogLoader event ID to file (see #11948)'
  # PR 2108 rleigh-dundee 'release-src includes bioformats version metadata'
  # PR 2133 dominikl 'Renamed Cut,Copy,Paste,Unlink options (see trac #11880)'
  # PR 2134 sbesson 'Unify command-line importer help'
  # PR 2150 ximenesuk 'Update logging jars'
  # PR 2152 joshmoore 'Bug fix and improvement for the Metadata.py example. (rebased onto dev_5_0)'

Repository: openmicroscopy/bioformats
Already up-to-date.

Merged PRs:
  # PR 915 imunro 'Fix for single channel  meas_mode 13 data.'
  # PR 941 melissalinkert 'Fix the download URL for stable release jars'
  # PR 946 melissalinkert 'Read internal pyramids from CellSens .vsi data'
  # PR 951 ctrueden 'Fix up Bio-Formats POMs'
  # PR 952 melissalinkert 'Memoization fixes'
  # PR 957 melissalinkert 'Correctly set Modulo annotations for multi-Image datasets (rebased onto dev_5_0)'
  # PR 958 melissalinkert 'Flex: be more permissive in parsing IFDs and XML (rebased onto dev_5_0)'
  # PR 960 melissalinkert 'Cache OME-XML between ImagePluses (rebased onto dev_5_0)'
  # PR 966 ximenesuk 'Update logging jars'
  # PR 967 jburel 'Patch for CellProfiler issue 1043 - Cellomics files with renamed filenam...'

Repository: ome/scripts
Already up-to-date.

Repository: openmicroscopy/ome-documentation
Already up-to-date.

Merged PRs:
  # PR 679 hflynn 'Suggested mailing list note update'

Generated by OMERO-5.0-merge-daily#602 (http://ci.openmicroscopy.org/job/OMERO-5.0-merge-daily/602/)