Update Spark to 0.8.1 and add hadoop2.2 profile
Merge services files when building assembly JAR
Wholeheartedly make Hadoop 2.2.0 the default
Add explicit dependency on scala-library 2.9.3
Merge pull request #53 from jey/hadoop22-fix

Fix Hadoop 2.2.0 support, upgrade to Spark 0.8.1
[maven-release-plugin] prepare release adam-parent-0.6.0
[maven-release-plugin] prepare for next development iteration
Adding Yy as base in MdTag
Merge pull request #56 from arahuja/mdtag

Adding Yy as base in MdTag
Adding reads to rods transformation.
Merge pull request #36 from bigdatagenomics/reads-to-rods

Adding reads to rods transformation.
Parse read groups and create mapping from bam/sam header
Merge pull request #48 from arahuja/readgroupsmapping

Parse read groups and create mapping from bam/sam header
Add Filter object as wrapper around Projection
Add recordGroupName to field list
Merge pull request #61 from arahuja/addfilter

Filter utility for inverse of Projection