Merge branch 'Verlet'
LJ

Added distance matrix, LJ pot, and cartesian differences
LJ

Still not compiling
LJ

It compiles.  That is all I promise.
Cleaned up the code a little.
LJ pot, Min Image, Forces

Once again, this compiles but has not been thoroughly tested.
Merge branch 'LJ-Potential' of https://github.com/gbondarevsky/Molecular-Simulations into LJ-Potential

Conflicts:
	MD_main
	MD_main.cpp
LJ Pot, Min Image, Forces

Compiles, but not thoroughly tested
no message
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Added potential energy total and neighbor list
Neighbor list now updates
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I spent a lot of time debugging and I think I made some headway.:
I spent a lot of time debugging.  I suggest you run the program before doing anything with it.
I did a lot of debugging. I suggest you run the program first. Talk to me if you need help deciphering the output`
Last change I think...Just run the program!
:
Last change I think... Just run the program first.