Adding regression test
Make the rv() getters const methods!
Fix doxygen latex errors
Adding getters for seq gen and transition kernel
Holy trailing whitespace batman
Update makefile for new test name
The log output on regression tests is useful
Adding print output for adapted cov matrix in test
Tidy up cov matrix print output
Add doLogitTransform option to input file

The default is on for DRAM and off for ML becuase ML isn't working with logit
transforms right now.
Remove trailing whitespace
Make a getter const
Add regression test for proposal cov matrix
Updating ignores
More ignores