[FIX] fixed license
[DOC] Adding documentation for Gaps#countCharacters


git-svn-id: http://svn.seqan.de/seqan/trunk@14734 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] fixed tr1 inclusion

git-svn-id: http://svn.seqan.de/seqan/trunk@14735 e6417c60-b987-48fd-844e-b20f0fcc1017
[FEATURE] Read pair extension for Gustaf

git-svn-id: http://svn.seqan.de/seqan/trunk@14736 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Gustaf: Compiler error due to missing include

git-svn-id: http://svn.seqan.de/seqan/trunk@14737 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Gustaf: limited size of vcf indel sequence output

git-svn-id: http://svn.seqan.de/seqan/trunk@14738 e6417c60-b987-48fd-844e-b20f0fcc1017
[INTERNAL] Gustaf: adjusted parser options

git-svn-id: http://svn.seqan.de/seqan/trunk@14739 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Fixing connectedComponents().

Use standard Union-Find data structure instead of traversal algorithm that appears to be non-working anyway.
[TEST] Gustaf: correcting app tests for new vcf output

git-svn-id: http://svn.seqan.de/seqan/trunk@14740 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Fixing copyGaps() to allow inserting gaps at the end of the dest.


git-svn-id: http://svn.seqan.de/seqan/trunk@14741 e6417c60-b987-48fd-844e-b20f0fcc1017
[FEATURE,INTERNAL] The auto_build.py script now also create source tarballs.

git-svn-id: http://svn.seqan.de/seqan/trunk@14742 e6417c60-b987-48fd-844e-b20f0fcc1017
Merge pull request #7 from holtgrewe/hotfix/connected_components

[FIX] Fixing connectedComponents().
[FIX] Gustaf: paired-end input and vcf out
Merge pull request #16 from ktrappe/hotfix/gustaf_input

[FIX] Gustaf: paired-end input and vcf out
[FEATURE] Build System: added SEQAN_DATE and SEQAN_REVISION from git or svn
[FIX] Search/Join: fixed date and revision
[FIX] Build System: removed duplicated git_wc_info macro
[FEATURE] Build System: added macro seqan_get_repository_info()

Conflicts:
	util/cmake/FindSeqAn.cmake
Merge pull request #17 from esiragusa/hotfix/date_revision

Fixed date and revision
[FIX] Masai: fixed date and revision