lumpy-sv: update to 0.2.7, remove Perl dependency

Closes #1144.
Move OpenFST, OpenGRM-ngram, and OpenGRM-thrax from core

As per the discussion in
https://github.com/Homebrew/homebrew/pull/31888, the maintainers feel
that homebrew-science is the right place for OpenFST and OpenGRM. I have
moved two homebrew formulae here (openfst and opengrm-ngram) as well as
a new one, opengrm-thrax, which also depends on OpenFST.

OpenGRM-thrax is a tool for compiling morphological analyzers and
context-sensitive rewrite rules into OpenFST automata.

Closes #1146.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
primer3: add primer3_config

Closes #1143.
adam 0.13.0 (new formula)

ADAM is a JVM based system for processing genomic data. ADAM runs
on the Apache Spark computing framework and can run both locally
and distributed across a cluster.

Closes #1142.
Merge remote-tracking branch 'upstream/master'