repackaged genome.services.utils to genome.util for more logical packaging. added contains(GenomicSequence) method to GenomicSequence class to make testing sequence queries simpler. working on BoundedQueryProcessor
added increment and decrement to GenomicRegion to slide it along the genome. Finished implementing BoundedQueryProcessor
Implemented SequenceQueryProcessor. Maybe should add a regex query
Implemented BasicGenomeReader to read the genome using a scanner and process queries using the main thread
consolidated util packages. Working on GenomePanel for genome plugin gui stuff
GenomePanel lay out completed. Need to create a SwingWorker to execute the GenomeFunction in a background thread and a progress monitor for the GenomeReader
Fixed GenomeDialogHandler to work with GenomePanel. Implemented GenomeMenuItem.
GenomeMenu now fully implemented and will created and remove GenomeMenuItems when GenomeFunctions are added/removed
created generic ProgressPanel and ProgressWindow to expedite creating progress tracking gui components
implemented GenomeExecutor to execute GenomeFunctions in a background thread and monitor them with an anonymous ProgressWindow.