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Bump Jags.jl to v"0.1.0"

Added Mamba functionality and initialization of commands to run Jags in
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Merge branch 'metadata-v2' of git://github.com/JuliaLang/METADATA.jl into metadata-v2
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Bump to v"0.1.1"

Minor cleanup of examples. Added parallel Bones2 example.
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Merge branch 'metadata-v2' of git://github.com/JuliaLang/METADATA.jl into metadata-v2
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Bump Stan to v"0.1.1"

Store intermediate files in tmp directory.
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Merge pull request #1742 from tkelman/pull-request/14c083c9

Tag LightXML v0.1.9
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Merge branch 'metadata-v2' of git://github.com/JuliaLang/METADATA.jl into metadata-v2
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