Fix foregrounding when restarting.
Merge pull request #2802 from joshmoore/lucenequerybuilder

Lucene Query Builder Unification
Merge pull request #2798 from joshmoore/adv-gen-config

Adv gen config
merge dev_5_0 -D org: PR 2726 (Preview fix)
merge dev_5_0 -D org: PR 2775 (Permissions Test Matlab : Whole Suite)
merge dev_5_0 -D org: PR 2785 (Initial Dockerfile for OMERO)
merge dev_5_0 -D org: PR 2793 (Matlab CZI job)
merge dev_5_0 -D org: PR 2801 (Update dev_5_0 submodules)
merge dev_5_0 -D org: PR 2804 (CLI: additional fake import tests (rebased onto dev_5_0))
merge dev_5_0 -D org: PR 2806 (Latest changes/fixes for Insight search)
merge dev_5_0 -D org: PR 2808 (Show error message if group permission downgrade fails)
merge dev_5_0 -D org: PR 2814 (Search improvements 2)
merge dev_5_0 -D org: PR 2815 (Use "pid" instead of "state" for checking service.)
merge dev_5_0 -D org: PR 2817 (Fix "omero admin restart --foreground" (assist #12467).)
merge dev_5_0 -D org

Repository: openmicroscopy/openmicroscopy
Excluded PRs:
  # PR 2681 joshmoore '12252 script limit' (status: )
  # PR 2653 joshmoore 'Server unit tests' (label: exclude)
  # PR 2667 sbesson 'Add a quiet option to CLI commands' (label: exclude)
  # PR 2228 jburel 'Connection scifio' (label: exclude)
  # PR 2816 sbesson 'Homebrew nginx' (status: pending)
  # PR 2108 rleigh-dundee 'release-src includes bioformats version metadata' (label: exclude)
Already up-to-date.

Merged PRs:
  # PR 2726 jburel 'Preview fix'
  # PR 2775 bramalingam 'Permissions Test Matlab : Whole Suite'
  # PR 2785 joshmoore 'Initial Dockerfile for OMERO'
  # PR 2793 sbesson 'Matlab CZI job'
  # PR 2801 snoopycrimecop 'Update dev_5_0 submodules'
  # PR 2804 sbesson 'CLI: additional fake import tests (rebased onto dev_5_0)'
  # PR 2806 dominikl 'Latest changes/fixes for Insight search'
  # PR 2808 dominikl 'Show error message if group permission downgrade fails'
  # PR 2814 will-moore 'Search improvements 2'
  # PR 2815 bpindelski 'Use "pid" instead of "state" for checking service.'
  # PR 2817 bpindelski 'Fix "omero admin restart --foreground" (assist #12467).'

Repository: openmicroscopy/bioformats
Updating cbfc55f..f5987a2
Merged PRs (fast-forward):
  # PR 1216 melissalinkert 'Fix Z and T size calculation for InCell 6000 data (rebased onto dev_5_0)'
  # PR 1221 melissalinkert 'Zeiss LSM: fix offset calculation for > 4GB files with SizeT > 1 (rebased onto dev_5_0)'
  # PR 1217 melissalinkert 'FakeReader improvements, part 1 (rebased onto dev_5_0)'

Merged PRs:
  # PR 1206 sbesson 'Fix bfGetReader for empty input'

Repository: ome/scripts
Updating d7e31d5..ad06908
Merged PRs (fast-forward):
  # PR 89 bpindelski 'Avoid division by 0 in Plot Profile.'

Repository: openmicroscopy/ome-documentation
Updating c6247bb..afe4ce5
Merged PRs (fast-forward):
  # PR 877 rleigh-dundee 'Update recommended PostgreSQL version to 9.2 for float bug fix'
  # PR 866 bpindelski 'Document client requirements for in-place import on Windows.'
  # PR 873 mtbc 'add note about consequences of "damaging" in-place import files'

Merged PRs:
  # PR 868 sbesson '5.0.3: CLI documentation'
  # PR 870 joshmoore 'New search docs'
  # PR 875 sbesson 'Expand setup.py test/py.test options description'
  # PR 881 joshmoore 'Adv config example'

Generated by OME-5.0-merge-push#118 (http://ci.openmicroscopy.org/job/OME-5.0-merge-push/118/)