Make Trajectory more easily abstractable for binary formats
Fix missing tag to end include guard
Fix missing tag to end include guard
Add Makefile and minimum compilable version
Rename lib directory to libmdalyzer to match target name
Fix bugs so that version actually compiles
+ Compile into shared library libmdalyzer.so
+ Move "parsers" to be "frames"
+ Fix a shared pointer problem in Trajectory by converting std::vector to std::map
Add Compute add/remove/get to Trajectory
+ Makefile updates
+ Add empty python/mdalyzer.cc file that will be used to do Python export
Add get/set functionality to Frame
+ Barebones VectorMath includes a Vector3 (x,y,z) struct
+ Getters, setters, data written for Frame
+ Trajectory updated to include Frame add/remove/get
+ pugixml.cpp renamed to make it compile more easily
Make Frame setters set bool flags appropriately
Add skeleton for HOOMD XML reader
+ Includes position and velocity reading (untested) with image unwrapping
+ Adds a barebones TriclinicBox for unwrapping images
+ Changes Trajectory.analyze() to force read all frames initially
Add basic Python export of module
+ Fix a linking problem in the Makefile
+ Fix virtual function definitions in all classes
+ Add install feature to Makefile
Fix header guards to move out of compiler namespace
Add design document
Revisions to design document
Implement examples of Frame and Compute
+ Finish HOOMDXMLFrame reader
+ Add DensityProfile compute
+ Add Boost Python export of Compute with pure virtual methods
+ Update documentation of Frame and Compute
Generalize Makefile install_dir and update README
PDB Reader Added

Added to PDB reader to the \frames. PDB file only contains the
positions and box information.
XYZ Reader Added

XYZ Frame Reader is added (we should probably look into somehow
prompting the user to input box dimensions since you need this to
compute all properties of interest.)
Fixed a few bugs with PDB and XYZ readers
Added a check to PDB reader

PDB file must contain a line starting with CRYST1, which contains
information about the dimensions and angles of the simulation box