test version with alignment trimming
trimming version of phyluce/generic_align.py, likely to discard
fix spacing issue in help ling
allow users to exclude certain genomes from slicing
add code to associate probe.matches.sqlite locus name with velvet nodename
add code to concatenate raxml bootreps from files
fix error in illumiprocessor example conf
ensure we remove ambiguous characters and ?
make base path configurable
Merge branch 'master' of github.com:faircloth-lab/phyluce
cleanup get_informative sites and add file output and multiprocessing
add code for extracting UCE contigs from a given database into a fasta file
move random choice out of if statement
adding code to extract intraspecific/population level data for contigs from db
update NCBI prep code
add example conf file for NCBI data prep
add code for trimming vecscreen results
comment out call to pdb
change import of tools to seqtools
add more info to csv option