thread suport for BWA
Merge branch 'master' of https://github.com/chipster/chipster.git
Add lightweight version of R-3.0 runtime
Added plot-annoheatmap.R and modified R-3 tools dir
Update bedtools in vm
EdgeR-multivariate.R and ngs-dea-edger-RNA.R to R-3
Made new R-folder in common and moved bed-utils.R there.
BlastN updated.
BlastN parameters.
Add python cpdb tool and remove beanshell
Fix cpdb sadl parameters and remove beanshell from runtimes.xml
Fix cpdb html
CPDB help text.
Merge branch 'master' of https://github.com/chipster/chipster.git
CPDB manual and script changes.
Release notes, manuals, CNA-seq tutorial, small tool changes.
Release notes
Picture added to annoheatmap manual
Handle mouse and yeast gene symbols
Annoheatmap modified to deal dataset with <= 3 samples