Fixed version numbers

Still had some 5.3.3 lingering
Version Automation Part 2

This time, I am more exact on exactly what files are processed for the version info. So if you want to start adding it to more files then you will need to make sure that its processed by the grunt file.
Updated bower version
removed execute permissions

They are not needed on any file except the run-tests.sh
Forgot a couple files
Merge branch 'version-fix-5.4.1' of github.com:joeworkman/foundation into joeworkman-version-fix-5.4.1
Merge branch 'joeworkman-version-fix-5.4.1' into version-test
Merge branch 'version-automation2' of github.com:joeworkman/foundation into joeworkman-version-automation2
fixing conflict
Merge branch 'permission-fix' of github.com:joeworkman/foundation into joeworkman-permission-fix
Merge branch 'joeworkman-permission-fix' into version-test
Merge branch 'master' of github.com:zurb/foundation