Manual sync of plugin with 
https://github.com/ManleyLab/autolase-plugin

- Changes to AutoLase.java & AutoLasePlugin.java
  Removed deprecated methods

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12983 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
[nggb] New bootstrapping script (autogen.sh).

Use the widely adopted filename, and simply call autoreconf.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12984 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
[nggb] Avoid warning due to spurious _SOURCES.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12985 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
[nggb] Use libtool, not setup.py, to build MMCorePy.

This is a work in progress and --enable-python will break the build
unless the include paths for Python and NumPy are set in CPPFLAGS.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12986 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
avoid various warnings

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12987 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
revert unintentional commit

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12988 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Slight cleanup of PositionListDlg class.  No functional changes (intended)

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12989 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Only enable tile button when one XY and one Z Stage are selected.  Need to change tile creator so that it uses the selected stages

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12990 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
setAcqusitionSettings added to the Script API

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12991 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
update MultiD window after calling setAcqSettings()

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12992 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
[nggb] Configuration for Python and NumPy.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12993 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
[nggb] Correct library dependencies for MMCore.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12994 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
ScionCam: Allow to build with Xcode 5.1.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12995 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
[nggb] MMCore depends on libboost_date_time.

The boost::gregorian symbols are used, resulting in missing symbols if
libboost_date_time is not linked, depending on how MMCore and Boost are built.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12996 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
[nggb] Correctly use JAVACFLAGS.

Add where missing; remove redundant -source and -target flags.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12997 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
FRE / PCO AG / 31.03.14

- Fixed snap (2051-2063); 

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12998 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Fix for actual interval property and error acquiring during external trigger.  

Review by Norman Glasgow

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12999 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
[nggb] Comments about caching.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13000 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Spot: Fix Mac build for current Xcode (5.1).

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13001 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
QCam: Fix build for current Xcode (5.1).

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13002 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd