added support for structural variants in VCF format. Integration with speedseq.
typo
add index for sv_event_id
only annotate variants <= 50Kb
add prototype tool for fusion gene detection.
require SV-aware version of CyVcf
update tests
remove debugging statement
missing file
more better fusion.
.
KISS
fixed SV strandedness
Merge pull request #331 from cc2qe/sv

fixed SV strandedness for generic breakends