Analysis first uses only chemostat conditions.
Then selects Amino Acid Metabolism genes with high correlation.
Finally, uses the sum of the amino acid group as a proxy for growth rate
and checks correlation with that sum.
The comparison of the correlations is done at the bottom.
Conclusions are that the signal is clearer when considering only
chemostat conditions, but there are only 4 such conditions.
Using the amino-acid metabolism genes as a proxy does not make the
signal cleaner, in the sense that both the global response, and the
response by functional groups does not become more distinct.
Cleanup of temporary analysis. Normalization to concentrations by
summing over proteins weight (after checking that it correlates well
with measured volumes and that undetected values are only a very small
fraction of the measurements)
Some cleanup, updated specific proteins graphs to allow easier output by
category and to include lines.