Merge pull request #52 from adrn/master

Create deploy document to describe deploy process
added dependencies to readme
ReST formatting
more RST formatting
require new version of runipy
prepend run_ to notebooks that were run, save as new file
comments
new script skeleton
ipython peeps changed name of hTML templates
broke out walking through directories
starting nbconvert bit
requires ipython > 2.0
use metadata from notebook file itself
change back to original directory
remove old setup file
use metadata directly from notebook file
use link_name not name
use correct key
whoops remove debug stuff
updated deploy script