change ordering and add missing amino acids
adapt BLOSUMs
adapt other matrices
adapt alphabet residue test
fix typos
[INTERNAL] change the plaintext matrices to be in new format as well
[fix] adapt Murphy10 reduction to new aminoacid alphabet
[API] remove ClusterReduction for now

since it would ne to be regenerated by script and doesn't provide much benefit
over Murphy10 anyway right now
[DOC] update dox to reflect changes
Merge pull request #762 from h-2/fix/666

Fix/666