qtrim filtering
Some ABI hotfixes
Chemistry type fix
Cehmistry fix 2
foldRight -> foldLeft in QualityAligner. Scala is not a great language.
GitIgnore update
Bugfixes
Merge pull request #1 from zmactep/vladimir-changes

Bugfixes
All exceptions in ABI are caught. I hope so.
Filenames and MASTER refactoring'
Rename YlabRunner.scala to YLabRunner.scala
Empty contigs are not in output now
Contigs exceptions
No more emtpy extracts
One more try to enable Coveralls.io
Update README.md
gapQuality parameter moved from Alignment to SangerUniversal.
Merge branch 'master' of github.com:zmactep/ylab
ycommon covered with tests
Some fixes in coveralls configuration. Do not look at anonymous classes and Constants